dsp_pandas.df.missing_data module

dsp_pandas.df.missing_data module#

Missing value related functions for pandas DataFrames.

Taken from pimms-learn.

dsp_pandas.df.missing_data.decompose_NAs(data: DataFrame, level: int | str, label: int = 'summary') → DataFrame[source]#

Decompose missing values by a level into real and indirectly imputed missing values as defined by the index level.

Real missing value have missing for all samples in a group. Indirectly imputed missing values are imputed by the the observed values in that group, e.g. the mean (or median) of it’s measurements.

Parameters:

  • data (pd.DataFrame) – DataFrame with samples in columns and features in rows.

  • level (Union[int, str]) – Index level to group by. Examples: Protein groups, peptides or precursors in MS data.

  • label (int, optional) – Column name of single column dataframe returned, by default ‘summary’

Returns:

One column DataFrame with summary information about missing values.

Return type:

pd.DataFrame

dsp_pandas.df.missing_data.get_record(data: DataFrame, columns_sample=False) → dict[source]#

Get summary record of data.

dsp_pandas.df.missing_data.percent_missing(df: DataFrame)[source]#

Total percentage of missing values in a DataFrame.

Parameters:

df (pd.DataFrame) – DataFrame with data.

Returns:

Proportion of missing values in the DataFrame.

Return type:

float

dsp_pandas.df.missing_data.percent_non_missing(df: DataFrame) → float[source]#